EPPN Summer School on Plant Phenotyping 

Szeges, June 30 - July 6

Lectures

JULY 01

MONDAY

09:00 – 09:10 

Imre Vass (Biological Research Centre HAS, Szeged, Hungary): The European Plant Phenotyping Network
»»Vass_EPPN intro.pdf

09:10 – 10:10

Marco van Schriek (Keygene, Wageningen, The Netherlands): Breeding for novel traits – is phenotyping useful for breeding?
»»van Schriek_Phenotyping for beeders.pdf

10:10 – 11:00

Imre Vass (Biological Research Centre, HAS, Szeged, Hungary): Photosynthesis as the basis of plant productivity
»»Vass_Photosyntesis.pdf

11:00 – 11:30

BREAK

11:30 – 12:30

Radek Kaňa (Institute of Microbiology ASCR, Třeboň, Czech Republic): What can we learn from thermal imaging of plants?
»»Kana_Thermal imaging.PDF

12:30 – 13:15

LUNCH

14:00 – 15:00

Éva Hideg (Biological Research Centre HAS, Szeged, Hungary): Detection of Reactive Oxygen Species in plants by imaging and other methods
»»Hideg_ROS.pdf

15:00 – 16:00

Tony Pridmore (School of Computer Science, University of Nottingham, UK): Imaging approaches for structural traits in the lab and in the field
»»Pridmore_Image analysis.pdf

16:00 – 16:30

BREAK

16:30 – 17:30

Andrew French (School of Biosciences, University of Nottingham, UK):    Root phenotyping
»»French_root phenotyping.PDF

JULY 03

WEDNESDAY

09:00 – 09:45

Ladislav Nedbal (CzechGlobe, Brno, Czech Republic): Multidimensional imaging in service of plant phenotyping
»»Nedbal_3D fluorescence.pdf

09:45 – 10:30

Thomas Roitsch (CzechGlobe, Brno, Czech Republic): Chl fluorescence signatures of plant functions
»»Roitsch.PDF

10:30 – 11:00

BREAK

11:00 – 12:00

Yaniv Semel (Phenom-Networks, Nes-Ziona, Israel): Mapping and characterizing of simple and complex traits in autotetraploid roses
»»Semel_Rose phenotyping.PDF

12:30 – 13:15

LUNCH

14:00 – 15:00

Dénes Dudits (Biological Research Centre, Szeged, HAS, Hungary): Combined application of plant phenomics and genomic tools in the analysis of drought responses
»»Dudits_drought tolerance.pdf

JULY 04

THURSDAY

09:00 – 10:00

Uwe Rascher (Forschungszentrum Jülich, Germany): Hyperspectral imaging as a tool of plant phenotyping
»»Rascher-Hyperspectral.PDF

10:00 – 11:00

Ferhan Ayaydin (Biological Research Centre, Szeged, HAS, Hungary): Confocal laser scanning microscopy Cereal Research Non-profit Ltd. Szeged
»»Ayaydin_confocal microscopy.PDF

Practicals:

 

1.

Radek Kaňa: Thermal Imaging
»»Thermoimaging_handout.pdf

2.

Petra Majer:  Determination of CO2 exchange in plants
»»CO2_handout.pdf

3.

András Cseri and Ferhan Ayaydin: Application of confocal microscopy to detect cell cycle phase of root cells
»»Confocal Microscopy_handout.pdf

4.

Gyula Czégény: Imaging of reactive oxygen production in leaves
»»ROS_Imaging_handout.pdf

5.

Kenny Paul: Measurement of photosynthetic electron transport by Dual PAM and portable Chl fluorometers
»»DUAL_PAM_handout.pdf

6.

Zsuzsanna Deák: Measurement of photosynthetic parameters by Chl fluorescence imaging
»»ImagingPAM_handout.pdf

7.

Tony Pridmore: Image analysis practical
»»Segmentation Practical.pdf

8.

Shoot Stress Diagnostic System

9.

Rain shelter system

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